PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09484-snap-gene-0.17-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 160aa    MW: 18317.9 Da    PI: 10.3958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09484-snap-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.3e-49101381127
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdk 66 
                                                +p+GfrFhPtdeelv++yL+ k+eg++ ++ +vi+ev+++k+eP+dLpk   +k++++ew+fFs+rd 
  maker-scaffold09484-snap-gene-0.17-mRNA-1  10 MPVGFRFHPTDEELVSHYLRLKMEGSDSQV-HVIPEVNVCKWEPSDLPKfsVIKSDDQEWFFFSPRDF 76 
                                                799************************999.99***************5458889999********** PP

                                        NAM  67 kyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                                                k+++++r+nratksgyWk tgkd+++++k +++++g+kktLvf++gr ++g++t+Wvmhey+
  maker-scaffold09484-snap-gene-0.17-mRNA-1  77 KSSNSNRTNRATKSGYWKVTGKDRKIKAKgTNNVIGTKKTLVFHRGRVRDGVRTSWVMHEYQ 138
                                                ****************************977778***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-524144IPR003441NAC domain
PROSITE profilePS5100547.1810160IPR003441NAC domain
PfamPF023659.2E-2911138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTSIKGMESM PVGFRFHPTD EELVSHYLRL KMEGSDSQVH VIPEVNVCKW EPSDLPKFSV  60
IKSDDQEWFF FSPRDFKSSN SNRTNRATKS GYWKVTGKDR KIKAKGTNNV IGTKKTLVFH  120
RGRVRDGVRT SWVMHEYQPT VTLPHQVGGV HVNALNLVQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-39913814139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317040.22e-61hypothetical protein POPTR_0011s15230g
SwissprotF4JN356e-63NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A0M4FLS31e-61A0A0M4FLS3_MANES; NAC transcription factors 88
TrEMBLB9I0P62e-61B9I0P6_POPTR; Uncharacterized protein
STRINGPOPTR_0011s15230.11e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-64NAC transcription factor-like 9